J3_7UPH_022

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GCUAAUC*GAGGUUAG*CAUAAGC

Length

22 nucleotides

Bulged bases

7UPH|1|I|U|3828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UPH|1|I|G|3788
7UPH|1|I|C|3789
7UPH|1|I|U|3790
7UPH|1|I|A|3791
7UPH|1|I|A|3792
7UPH|1|I|U|3793
7UPH|1|I|C|3794
*
7UPH|1|I|G|3810
7UPH|1|I|A|3811
7UPH|1|I|G|3812
7UPH|1|I|G|3813
7UPH|1|I|U|3814
7UPH|1|I|U|3815
7UPH|1|I|A|3816
7UPH|1|I|G|3817
*
7UPH|1|I|C|3826
7UPH|1|I|A|3827
7UPH|1|I|U|3828
7UPH|1|I|A|3829
7UPH|1|I|A|3830
7UPH|1|I|G|3831
7UPH|1|I|C|3832

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain N

50S ribosomal protein L5

Chain n

50S ribosomal protein L18

Chain v

50S ribosomal protein L27