J3_7UPH_027

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUUGACAUCCACGGAAG*UGUGCCUUCGGGAACCGUGAGACAG*CUUACG

Length

48 nucleotides

Bulged bases

7UPH|1|I|U|1029, 7UPH|1|I|C|1030, 7UPH|1|I|U|1211, 7UPH|1|I|C|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7UPH|1|I|C|989
7UPH|1|I|U|990
7UPH|1|I|U|991
7UPH|1|I|G|992
7UPH|1|I|A|993
7UPH|1|I|C|994
7UPH|1|I|A|995
7UPH|1|I|U|996
7UPH|1|I|C|997
7UPH|1|I|C|998
7UPH|1|I|A|999
7UPH|1|I|C|1000
7UPH|1|I|G|1001
7UPH|1|I|G|1002
7UPH|1|I|A|1003
7UPH|1|I|A|1004
7UPH|1|I|G|1005
*
7UPH|1|I|U|1022
7UPH|1|I|G|1023
7UPH|1|I|U|1024
7UPH|1|I|G|1025
7UPH|1|I|C|1026
7UPH|1|I|C|1027
7UPH|1|I|U|1028
7UPH|1|I|U|1029
7UPH|1|I|C|1030
7UPH|1|I|G|1031
7UPH|1|I|G|1032
7UPH|1|I|G|1033
7UPH|1|I|A|1034
7UPH|1|I|A|1035
7UPH|1|I|C|1036
7UPH|1|I|C|1037
7UPH|1|I|G|1038
7UPH|1|I|U|1039
7UPH|1|I|G|1040
7UPH|1|I|A|1041
7UPH|1|I|G|1042
7UPH|1|I|A|1043
7UPH|1|I|C|1044
7UPH|1|I|A|1045
7UPH|1|I|G|1046
*
7UPH|1|I|C|1209
7UPH|1|I|U|1210
7UPH|1|I|U|1211
7UPH|1|I|A|1212
7UPH|1|I|C|1213
7UPH|1|I|G|1214

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain A

30S ribosomal protein S14