J3_7UPH_032
3D structure
- PDB id
- 7UPH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a ribosome with tethered subunits
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.18 Å
Loop
- Sequence
- GCAC*GUCAUAGUGAUCC*GCUCAAC
- Length
- 24 nucleotides
- Bulged bases
- 7UPH|1|I|A|3882, 7UPH|1|I|U|3884, 7UPH|1|I|A|3920
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UPH_032 not in the Motif Atlas
- Geometric match to J3_4WF9_019
- Geometric discrepancy: 0.312
- The information below is about J3_4WF9_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7UPH|1|I|G|3776
7UPH|1|I|C|3777
7UPH|1|I|A|3778
7UPH|1|I|C|3779
*
7UPH|1|I|G|3877
7UPH|1|I|U|3878
7UPH|1|I|C|3879
7UPH|1|I|A|3880
7UPH|1|I|U|3881
7UPH|1|I|A|3882
7UPH|1|I|G|3883
7UPH|1|I|U|3884
7UPH|1|I|G|3885
7UPH|1|I|A|3886
7UPH|1|I|U|3887
7UPH|1|I|C|3888
7UPH|1|I|C|3889
*
7UPH|1|I|G|3915
7UPH|1|I|C|3916
7UPH|1|I|U|3917
7UPH|1|I|C|3918
7UPH|1|I|A|3919
7UPH|1|I|A|3920
7UPH|1|I|C|3921
Current chains
- Chain I
- Tethered rRNA
Nearby chains
- Chain T
- 50S ribosomal protein L15
- Chain j
- 50S ribosomal protein L33
- Chain l
- 50S ribosomal protein L35
- Chain v
- 50S ribosomal protein L27
Coloring options: