3D structure

PDB id
7UPH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a ribosome with tethered subunits
Experimental method
ELECTRON MICROSCOPY
Resolution
4.18 Å

Loop

Sequence
GCAC*GUCAUAGUGAUCC*GCUCAAC
Length
24 nucleotides
Bulged bases
7UPH|1|I|A|3882, 7UPH|1|I|U|3884, 7UPH|1|I|A|3920
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UPH_032 not in the Motif Atlas
Geometric match to J3_4WF9_019
Geometric discrepancy: 0.312
The information below is about J3_4WF9_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39320.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-F-F-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

7UPH|1|I|G|3776
7UPH|1|I|C|3777
7UPH|1|I|A|3778
7UPH|1|I|C|3779
*
7UPH|1|I|G|3877
7UPH|1|I|U|3878
7UPH|1|I|C|3879
7UPH|1|I|A|3880
7UPH|1|I|U|3881
7UPH|1|I|A|3882
7UPH|1|I|G|3883
7UPH|1|I|U|3884
7UPH|1|I|G|3885
7UPH|1|I|A|3886
7UPH|1|I|U|3887
7UPH|1|I|C|3888
7UPH|1|I|C|3889
*
7UPH|1|I|G|3915
7UPH|1|I|C|3916
7UPH|1|I|U|3917
7UPH|1|I|C|3918
7UPH|1|I|A|3919
7UPH|1|I|A|3920
7UPH|1|I|C|3921

Current chains

Chain I
Tethered rRNA

Nearby chains

Chain T
50S ribosomal protein L15
Chain j
50S ribosomal protein L33
Chain l
50S ribosomal protein L35
Chain v
50S ribosomal protein L27

Coloring options:


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