3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
UCGAUC*GGAAU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UQZ_009 not in the Motif Atlas
Homologous match to J3_5TBW_010
Geometric discrepancy: 0.0718
The information below is about J3_5TBW_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_70383.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

7UQZ|1|1|U|1526
7UQZ|1|1|C|1527
7UQZ|1|1|G|1528
7UQZ|1|1|A|1529
7UQZ|1|1|U|1530
7UQZ|1|1|C|1531
*
7UQZ|1|1|G|1591
7UQZ|1|1|G|1592
7UQZ|1|1|A|1593
7UQZ|1|1|A|1594
7UQZ|1|1|U|1595
*
7UQZ|1|1|A|1612
7UQZ|1|1|A|1613

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 2
5.8S ribosomal RNA; 5.8S rRNA
Chain X
60S ribosomal protein L25
Chain g
60S ribosomal protein L34-A
Chain k
60S ribosomal protein L38
Chain l
60S ribosomal protein L39
Chain n
Pescadillo homolog

Coloring options:


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