3D structure

PDB id
7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CUC*GAA*UAAAAG
Length
12 nucleotides
Bulged bases
7UQZ|1|1|A|2703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7UQZ_013 not in the Motif Atlas
Homologous match to J3_8C3A_010
Geometric discrepancy: 0.1569
The information below is about J3_8C3A_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.5
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

7UQZ|1|1|C|2664
7UQZ|1|1|U|2665
7UQZ|1|1|C|2666
*
7UQZ|1|1|G|2690
7UQZ|1|1|A|2691
7UQZ|1|1|A|2692
*
7UQZ|1|1|U|2701
7UQZ|1|1|A|2702
7UQZ|1|1|A|2703
7UQZ|1|1|A|2704
7UQZ|1|1|A|2705
7UQZ|1|1|G|2706

Current chains

Chain 1
25S rRNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain D
60S ribosomal protein L5
Chain J
60S ribosomal protein L11-A
Chain v
Ribosome production factor 2 homolog

Coloring options:


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