J3_7UQZ_021
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UAG*CGUA(OMG)*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UQZ_021 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.0857
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7UQZ|1|1|U|829
7UQZ|1|1|A|830
7UQZ|1|1|G|831
*
7UQZ|1|1|C|863
7UQZ|1|1|G|864
7UQZ|1|1|U|865
7UQZ|1|1|A|866
7UQZ|1|1|OMG|867
*
7UQZ|1|1|U|892
7UQZ|1|1|C|893
7UQZ|1|1|G|894
7UQZ|1|1|A|895
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain R
- 60S ribosomal protein L19-A
- Chain g
- 60S ribosomal protein L34-A
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