J3_7UQZ_022
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- (PSU)U*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 7UQZ|1|1|A|1065, 7UQZ|1|1|U|1094, 7UQZ|1|1|U|1095
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7UQZ_022 not in the Motif Atlas
- Homologous match to J3_8P9A_051
- Geometric discrepancy: 0.3906
- The information below is about J3_8P9A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_09667.1
- Basepair signature
- cWW-cWW-F-F-cSS-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7UQZ|1|1|PSU|986
7UQZ|1|1|U|987
*
7UQZ|1|1|A|1062
7UQZ|1|1|G|1063
7UQZ|1|1|A|1064
7UQZ|1|1|A|1065
7UQZ|1|1|G|1066
*
7UQZ|1|1|C|1092
7UQZ|1|1|A|1093
7UQZ|1|1|U|1094
7UQZ|1|1|U|1095
7UQZ|1|1|U|1096
7UQZ|1|1|G|1097
7UQZ|1|1|A|1098
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain F
- 60S ribosomal protein L7-A
- Chain T
- 60S ribosomal protein L21-A
Coloring options: