J3_7UVV_018

3D structure

PDB id

7UVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAUAGAUCC

Length

28 nucleotides

Bulged bases

7UVV|1|A|U|503, 7UVV|1|A|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UVV_018 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2098

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

7UVV|1|A|G|37
7UVV|1|A|C|38
*
7UVV|1|A|G|473
7UVV|1|A|C|474
7UVV|1|A|G|475
7UVV|1|A|A|476
7UVV|1|A|A|477
7UVV|1|A|A|478
7UVV|1|A|A|479
7UVV|1|A|G|480
7UVV|1|A|A|481
7UVV|1|A|A|482
7UVV|1|A|C|483
*
7UVV|1|A|G|495
7UVV|1|A|A|496
7UVV|1|A|G|497
7UVV|1|A|U|498
7UVV|1|A|G|499
7UVV|1|A|A|500
7UVV|1|A|A|501
7UVV|1|A|A|502
7UVV|1|A|U|503
7UVV|1|A|A|504
7UVV|1|A|G|505
7UVV|1|A|A|506
7UVV|1|A|U|507
7UVV|1|A|C|508
7UVV|1|A|C|509

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24