J3_7UW1_018

3D structure

PDB id

7UW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii 70S ribosome-Streptothricin-D complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAUAGAUCC

Length

28 nucleotides

Bulged bases

7UW1|1|A|U|503, 7UW1|1|A|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7UW1_018 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2139

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.2

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

7UW1|1|A|G|37
7UW1|1|A|C|38
*
7UW1|1|A|G|473
7UW1|1|A|C|474
7UW1|1|A|G|475
7UW1|1|A|A|476
7UW1|1|A|A|477
7UW1|1|A|A|478
7UW1|1|A|A|479
7UW1|1|A|G|480
7UW1|1|A|A|481
7UW1|1|A|A|482
7UW1|1|A|C|483
*
7UW1|1|A|G|495
7UW1|1|A|A|496
7UW1|1|A|G|497
7UW1|1|A|U|498
7UW1|1|A|G|499
7UW1|1|A|A|500
7UW1|1|A|A|501
7UW1|1|A|A|502
7UW1|1|A|U|503
7UW1|1|A|A|504
7UW1|1|A|G|505
7UW1|1|A|A|506
7UW1|1|A|U|507
7UW1|1|A|C|508
7UW1|1|A|C|509

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24