J3_7V08_001
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 7V08|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V08_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.0727
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7V08|1|1|C|113
7V08|1|1|A|114
7V08|1|1|A|115
7V08|1|1|A|116
7V08|1|1|U|117
7V08|1|1|U|118
7V08|1|1|U|119
7V08|1|1|G|120
7V08|1|1|A|121
7V08|1|1|A|122
7V08|1|1|A|123
*
7V08|1|1|U|149
7V08|1|1|A|150
7V08|1|1|A|151
7V08|1|1|U|152
7V08|1|1|U|153
7V08|1|1|U|154
7V08|1|1|G|155
7V08|1|1|G|156
7V08|1|1|A|157
7V08|1|1|G|158
*
7V08|1|1|C|263
7V08|1|1|G|264
7V08|1|1|A|265
7V08|1|1|A|266
7V08|1|1|G|267
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain G
- RPL8A isoform 1
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
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