J3_7V08_011
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V08_011 not in the Motif Atlas
- Homologous match to J3_8C3A_008
- Geometric discrepancy: 0.0748
- The information below is about J3_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7V08|1|1|A|2432
7V08|1|1|U|2433
7V08|1|1|U|2434
7V08|1|1|G|2435
*
7V08|1|1|C|2512
7V08|1|1|U|2513
7V08|1|1|U|2514
7V08|1|1|A|2515
7V08|1|1|U|2516
7V08|1|1|U|2517
*
7V08|1|1|A|2590
7V08|1|1|A|2591
7V08|1|1|G|2592
7V08|1|1|A|2593
7V08|1|1|C|2594
7V08|1|1|A|2595
7V08|1|1|U|2596
7V08|1|1|U|2597
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain G
- RPL8A isoform 1
- Chain N
- 60S ribosomal protein L15-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: