J3_7V08_019
3D structure
- PDB id
- 7V08 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.36 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7V08|1|1|U|343, 7V08|1|1|A|351, 7V08|1|2|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V08_019 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0531
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7V08|1|1|C|340
7V08|1|1|G|341
7V08|1|1|A|342
7V08|1|1|U|343
7V08|1|1|A|344
7V08|1|1|G|345
7V08|1|1|C|346
7V08|1|1|G|347
7V08|1|1|A|348
7V08|1|1|A|349
7V08|1|1|C|350
7V08|1|1|A|351
7V08|1|1|A|352
7V08|1|1|G|353
7V08|1|1|U|354
7V08|1|1|A|355
7V08|1|1|C|356
*
7V08|1|1|G|363
7V08|1|1|G|364
7V08|1|1|A|365
7V08|1|1|A|366
7V08|1|1|A|367
7V08|1|1|G|368
*
7V08|1|2|C|21
7V08|1|2|U|22
7V08|1|2|U|23
7V08|1|2|G|24
Current chains
- Chain 1
- 25S rRNA
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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