J3_7V2L_011
3D structure
- PDB id
- 7V2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAAUG*CCCAGUUC*GCCG
- Length
- 17 nucleotides
- Bulged bases
- 7V2L|1|A|U|1222, 7V2L|1|A|U|1284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V2L_011 not in the Motif Atlas
- Homologous match to J3_4LFB_009
- Geometric discrepancy: 0.1189
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
7V2L|1|A|C|1219
7V2L|1|A|A|1220
7V2L|1|A|A|1221
7V2L|1|A|U|1222
7V2L|1|A|G|1223
*
7V2L|1|A|C|1278
7V2L|1|A|C|1279
7V2L|1|A|C|1280
7V2L|1|A|A|1281
7V2L|1|A|G|1282
7V2L|1|A|U|1283
7V2L|1|A|U|1284
7V2L|1|A|C|1285
*
7V2L|1|A|G|1316
7V2L|1|A|C|1317
7V2L|1|A|C|1318
7V2L|1|A|G|1319
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain M
- 30S ribosomal protein S13
- Chain V
- 30S ribosomal protein Thx
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