J3_7V2L_012
3D structure
- PDB id
- 7V2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 7V2L|1|A|C|49, 7V2L|1|A|A|51, 7V2L|1|A|A|52
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V2L_012 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0602
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7V2L|1|A|G|47
7V2L|1|A|C|48
7V2L|1|A|C|49
7V2L|1|A|U|50
7V2L|1|A|A|51
7V2L|1|A|A|52
7V2L|1|A|G|53
*
7V2L|1|A|U|355
7V2L|1|A|A|356
7V2L|1|A|G|357
7V2L|1|A|G|358
7V2L|1|A|A|359
7V2L|1|A|A|360
7V2L|1|A|U|361
7V2L|1|A|C|362
7V2L|1|A|U|363
*
7V2L|1|A|A|389
7V2L|1|A|G|390
7V2L|1|A|C|391
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain L
- 30S ribosomal protein S12
- Chain P
- 30S ribosomal protein S16
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