J3_7V2L_016
3D structure
- PDB id
- 7V2L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K1k2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UG*UGUU*GCAA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V2L_016 not in the Motif Atlas
- Homologous match to J3_4LFB_017
- Geometric discrepancy: 0.1515
- The information below is about J3_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_79369.1
- Basepair signature
- cWW-cWW-tSS-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
7V2L|1|A|U|1056
7V2L|1|A|G|1057
*
7V2L|1|A|U|1066
7V2L|1|A|G|1067
7V2L|1|A|U|1068
7V2L|1|A|U|1069
*
7V2L|1|A|G|1082
7V2L|1|A|C|1083
7V2L|1|A|A|1084
7V2L|1|A|A|1085
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain E
- 30S ribosomal protein S5
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