J3_7V2O_007

3D structure

PDB id

7V2O (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7V2O_007 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1579

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7V2O|1|A|C|968
7V2O|1|A|U|969
7V2O|1|A|U|970
7V2O|1|A|G|971
*
7V2O|1|A|C|1028
7V2O|1|A|A|1029
7V2O|1|A|G|1030
*
7V2O|1|A|C|1192
7V2O|1|A|U|1193
7V2O|1|A|U|1194
7V2O|1|A|A|1195
7V2O|1|A|C|1196
7V2O|1|A|G|1197

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain N

30S ribosomal protein S14 type Z