J3_7V2O_013
3D structure
- PDB id
- 7V2O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophilus 30S ribosome with KsgA, class K4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7V2O_013 not in the Motif Atlas
- Homologous match to J3_5J7L_052
- Geometric discrepancy: 0.1219
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
7V2O|1|A|C|914
7V2O|1|A|A|915
7V2O|1|A|A|916
7V2O|1|A|G|917
*
7V2O|1|A|C|1326
7V2O|1|A|U|1327
7V2O|1|A|A|1328
7V2O|1|A|G|1329
7V2O|1|A|U|1330
7V2O|1|A|A|1331
7V2O|1|A|A|1332
*
7V2O|1|A|U|1355
7V2O|1|A|G|1356
7V2O|1|A|A|1357
7V2O|1|A|A|1358
7V2O|1|A|U|1359
7V2O|1|A|A|1360
7V2O|1|A|C|1361
7V2O|1|A|G|1362
Current chains
- Chain A
- 16s ribosomal RNA
Nearby chains
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
Coloring options: