J3_7WTO_001

3D structure

PDB id

7WTO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-1 (without Rps2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTO_001 not in the Motif Atlas

Homologous match to J3_8C3A_082

Geometric discrepancy: 0.0935

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7WTO|1|C2|A|41
7WTO|1|C2|G|42
*
7WTO|1|C2|C|433
7WTO|1|C2|G|434
7WTO|1|C2|C|435
7WTO|1|C2|A|436
7WTO|1|C2|A|437
7WTO|1|C2|A|438
7WTO|1|C2|U|439
*
7WTO|1|C2|A|464
7WTO|1|C2|G|465
7WTO|1|C2|U|466

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SJ

40S ribosomal protein S9-A

Chain SX

40S ribosomal protein S23-A