J3_7WTR_007

3D structure

PDB id

7WTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a yeast pre-40S ribosomal subunit - State Tsr1-3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTR|1|C2|A|213
7WTR|1|C2|G|214
7WTR|1|C2|A|215
7WTR|1|C2|U|216
7WTR|1|C2|A|217
7WTR|1|C2|A|218
7WTR|1|C2|A|219
7WTR|1|C2|A|220
7WTR|1|C2|A|221
7WTR|1|C2|A|222
7WTR|1|C2|U|223
7WTR|1|C2|C|224
7WTR|1|C2|A|225
7WTR|1|C2|A|226
7WTR|1|C2|U|227
7WTR|1|C2|G|228
*
7WTR|1|C2|C|237
7WTR|1|C2|U|238
7WTR|1|C2|C|239
7WTR|1|C2|U|240
7WTR|1|C2|U|241
7WTR|1|C2|U|242
7WTR|1|C2|G|243
*
7WTR|1|C2|C|250
7WTR|1|C2|A|251
7WTR|1|C2|U|252

Current chains

Chain C2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4-A

Chain SG

40S ribosomal protein S6-A

Chain SI

40S ribosomal protein S8-A

Chain SL

40S ribosomal protein S11-A