J3_7WTS_006
3D structure
- PDB id
- 7WTS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State UTP14
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7WTS_006 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1675
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7WTS|1|2|C|1218
7WTS|1|2|C|1219
7WTS|1|2|A|1220
7WTS|1|2|G|1221
*
7WTS|1|2|C|1645
7WTS|1|2|C|1646
7WTS|1|2|A|1647
7WTS|1|2|G|1648
7WTS|1|2|U|1649
7WTS|1|2|A|1650
7WTS|1|2|A|1651
*
7WTS|1|2|U|1673
7WTS|1|2|G|1674
7WTS|1|2|A|1675
7WTS|1|2|U|1676
7WTS|1|2|U|1677
7WTS|1|2|A|1678
7WTS|1|2|A|1679
7WTS|1|2|G|1680
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain q
- Probable 18S rRNA (guanine-N(7))-methyltransferase
Coloring options: