J3_7WTT_006
3D structure
- PDB id
- 7WTT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (with CK1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7WTT_006 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1361
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7WTT|1|2|C|1218
7WTT|1|2|C|1219
7WTT|1|2|A|1220
7WTT|1|2|G|1221
*
7WTT|1|2|C|1645
7WTT|1|2|C|1646
7WTT|1|2|A|1647
7WTT|1|2|G|1648
7WTT|1|2|U|1649
7WTT|1|2|A|1650
7WTT|1|2|A|1651
*
7WTT|1|2|U|1673
7WTT|1|2|G|1674
7WTT|1|2|A|1675
7WTT|1|2|U|1676
7WTT|1|2|U|1677
7WTT|1|2|A|1678
7WTT|1|2|A|1679
7WTT|1|2|G|1680
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain K
- RRP12-like protein
- Chain Q
- 40S ribosomal protein S16
- Chain c
- 40S ribosomal protein S28
- Chain q
- Probable 18S rRNA (guanine-N(7))-methyltransferase
- Chain w
- Bystin
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