J3_7WTU_009

3D structure

PDB id

7WTU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-A1 (without CK1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGGC*GGACAAG*CCCGAGAUUG

Length

22 nucleotides

Bulged bases

7WTU|1|2|A|1454, 7WTU|1|2|U|1477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WTU|1|2|C|1391
7WTU|1|2|U|1392
7WTU|1|2|G|1393
7WTU|1|2|G|1394
7WTU|1|2|C|1395
*
7WTU|1|2|G|1450
7WTU|1|2|G|1451
7WTU|1|2|A|1452
7WTU|1|2|C|1453
7WTU|1|2|A|1454
7WTU|1|2|A|1455
7WTU|1|2|G|1456
*
7WTU|1|2|C|1470
7WTU|1|2|C|1471
7WTU|1|2|C|1472
7WTU|1|2|G|1473
7WTU|1|2|A|1474
7WTU|1|2|G|1475
7WTU|1|2|A|1476
7WTU|1|2|U|1477
7WTU|1|2|U|1478
7WTU|1|2|G|1479

Current chains

Chain 2

18S rRNA

Nearby chains

Chain K

RRP12-like protein

Chain R

40S ribosomal protein S17

Chain z

Ribosome biogenesis protein SLX9 homolog