J3_7WTX_008

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTX_008 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1258

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7WTX|1|2|U|1350
7WTX|1|2|G|1351
*
7WTX|1|2|U|1360
7WTX|1|2|G|1361
7WTX|1|2|U|1362
7WTX|1|2|C|1363
*
7WTX|1|2|G|1375
7WTX|1|2|A|1376
7WTX|1|2|U|1377
7WTX|1|2|A|1378
7WTX|1|2|A|1379

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain C

40S ribosomal protein S2

Chain y

RNA-binding protein NOB1