J3_7WTX_011

3D structure

PDB id

7WTX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7WTX|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTX_011 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0598

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7WTX|1|2|A|40
7WTX|1|2|G|41
7WTX|1|2|A|42
7WTX|1|2|U|43
7WTX|1|2|U|44
7WTX|1|2|A|45
7WTX|1|2|A|46
7WTX|1|2|G|47
*
7WTX|1|2|C|479
7WTX|1|2|G|480
7WTX|1|2|C|481
7WTX|1|2|G|482
7WTX|1|2|C|483
7WTX|1|2|A|484
7WTX|1|2|A|485
7WTX|1|2|A|486
7WTX|1|2|U|487
*
7WTX|1|2|A|512
7WTX|1|2|G|513
7WTX|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog