J3_7WTZ_012

3D structure

PDB id

7WTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7WTZ|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7WTZ_012 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.052

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7WTZ|1|2|A|40
7WTZ|1|2|G|41
7WTZ|1|2|A|42
7WTZ|1|2|U|43
7WTZ|1|2|U|44
7WTZ|1|2|A|45
7WTZ|1|2|A|46
7WTZ|1|2|G|47
*
7WTZ|1|2|C|479
7WTZ|1|2|G|480
7WTZ|1|2|C|481
7WTZ|1|2|G|482
7WTZ|1|2|C|483
7WTZ|1|2|A|484
7WTZ|1|2|A|485
7WTZ|1|2|A|486
7WTZ|1|2|U|487
*
7WTZ|1|2|A|512
7WTZ|1|2|G|513
7WTZ|1|2|U|514

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain u

Pre-rRNA-processing protein TSR1 homolog