J3_7WU0_007

3D structure

PDB id

7WU0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human pre-40S ribosomal subunit - State RRP12-B3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUAAUUUG*CGGGAAACCUCAC*GGCUG

Length

27 nucleotides

Bulged bases

7WU0|1|2|G|1256, 7WU0|1|2|A|1258, 7WU0|1|2|A|1260, 7WU0|1|2|U|1519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7WU0|1|2|C|1237
7WU0|1|2|U|1238
7WU0|1|2|U|1239
7WU0|1|2|A|1240
7WU0|1|2|A|1241
7WU0|1|2|U|1242
7WU0|1|2|U|1243
7WU0|1|2|U|1244
7WU0|1|2|G|1245
*
7WU0|1|2|C|1254
7WU0|1|2|G|1255
7WU0|1|2|G|1256
7WU0|1|2|G|1257
7WU0|1|2|A|1258
7WU0|1|2|A|1259
7WU0|1|2|A|1260
7WU0|1|2|C|1261
7WU0|1|2|C|1262
7WU0|1|2|U|1263
7WU0|1|2|C|1264
7WU0|1|2|A|1265
7WU0|1|2|C|1266
*
7WU0|1|2|G|1516
7WU0|1|2|G|1517
7WU0|1|2|C|1518
7WU0|1|2|U|1519
7WU0|1|2|G|1520

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

40S ribosomal protein S15

Chain S

40S ribosomal protein S18

Chain u

Pre-rRNA-processing protein TSR1 homolog

Chain w

Bystin