J3_7XAM_004

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGA*UUGAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_004 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.2109

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|G|1173
7XAM|1|A|G|1174
7XAM|1|A|A|1175
*
7XAM|1|A|U|1199
7XAM|1|A|U|1200
7XAM|1|A|G|1201
7XAM|1|A|A|1202
7XAM|1|A|A|1203
7XAM|1|A|A|1204
7XAM|1|A|G|1205
*
7XAM|1|A|C|1220
7XAM|1|A|A|1221
7XAM|1|A|C|1222

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11

Chain f

50S ribosomal protein L36