J3_7XAM_010

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7XAM|1|A|A|2742, 7XAM|1|A|U|2743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_010 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.094

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7XAM|1|A|C|2741
7XAM|1|A|A|2742
7XAM|1|A|U|2743
7XAM|1|A|C|2744
*
7XAM|1|A|G|2769
7XAM|1|A|U|2770
7XAM|1|A|U|2771
*
7XAM|1|A|A|2785
7XAM|1|A|U|2786
7XAM|1|A|U|2787
7XAM|1|A|A|2788
7XAM|1|A|A|2789
7XAM|1|A|A|2790
7XAM|1|A|G|2791

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L14