J3_7XAM_013

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_013 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.0862

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

7XAM|1|A|G|27
7XAM|1|A|C|28
*
7XAM|1|A|G|562
7XAM|1|A|U|563
7XAM|1|A|G|564
7XAM|1|A|A|565
7XAM|1|A|A|566
7XAM|1|A|A|567
7XAM|1|A|A|568
7XAM|1|A|G|569
*
7XAM|1|A|C|596
7XAM|1|A|C|597

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20

Chain T

50S ribosomal protein L22

Chain V

50S ribosomal protein L24