J3_7XAM_019

3D structure

PDB id

7XAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Stationary phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

7XAM|1|A|C|1460, 7XAM|1|A|A|1499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XAM_019 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.1421

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7XAM|1|A|U|1459
7XAM|1|A|C|1460
7XAM|1|A|G|1461
7XAM|1|A|G|1462
7XAM|1|A|G|1463
7XAM|1|A|A|1464
7XAM|1|A|C|1465
*
7XAM|1|A|G|1496
7XAM|1|A|A|1497
7XAM|1|A|C|1498
7XAM|1|A|A|1499
7XAM|1|A|A|1500
*
7XAM|1|A|U|1517
7XAM|1|A|A|1518

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23