J3_7XNX_002
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGAAAAG*CG*CA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNX_002 not in the Motif Atlas
- Homologous match to J3_5TBW_002
- Geometric discrepancy: 0.0819
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7XNX|1|L1|U|380
7XNX|1|L1|U|381
7XNX|1|L1|G|382
7XNX|1|L1|A|383
7XNX|1|L1|A|384
7XNX|1|L1|A|385
7XNX|1|L1|A|386
7XNX|1|L1|G|387
*
7XNX|1|L1|C|414
7XNX|1|L1|G|415
*
7XNX|1|L3|C|19
7XNX|1|L3|A|20
Current chains
- Chain L1
- 28S rRNA
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: