J3_7XNX_023
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- C(JMH)AG*CCAGUAA*UGAUU(A2M)AG
- Length
- 19 nucleotides
- Bulged bases
- 7XNX|1|S2|A|1679
- QA status
- Modified nucleotides: JMH, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNX_023 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.1178
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7XNX|1|S2|C|1218
7XNX|1|S2|JMH|1219
7XNX|1|S2|A|1220
7XNX|1|S2|G|1221
*
7XNX|1|S2|C|1645
7XNX|1|S2|C|1646
7XNX|1|S2|A|1647
7XNX|1|S2|G|1648
7XNX|1|S2|U|1649
7XNX|1|S2|A|1650
7XNX|1|S2|A|1651
*
7XNX|1|S2|U|1673
7XNX|1|S2|G|1674
7XNX|1|S2|A|1675
7XNX|1|S2|U|1676
7XNX|1|S2|U|1677
7XNX|1|S2|A2M|1678
7XNX|1|S2|A|1679
7XNX|1|S2|G|1680
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain SF
- 40S ribosomal protein S5
- Chain SQ
- 40S ribosomal protein S16
- Chain SR
- 40S ribosomal protein S17
- Chain Sc
- 40S ribosomal protein S28
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