J3_7XNX_032
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 7XNX|1|L1|G|409, 7XNX|1|L1|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNX_032 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.3022
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
7XNX|1|L1|U|380
7XNX|1|L1|U|381
7XNX|1|L1|G|382
7XNX|1|L1|A|383
7XNX|1|L1|A|384
7XNX|1|L1|A|385
7XNX|1|L1|A|386
7XNX|1|L1|G|387
7XNX|1|L1|A|388
7XNX|1|L1|A|389
7XNX|1|L1|C|390
*
7XNX|1|L1|G|401
7XNX|1|L1|A|402
7XNX|1|L1|G|403
7XNX|1|L1|U|404
7XNX|1|L1|U|405
7XNX|1|L1|C|406
7XNX|1|L1|A|407
7XNX|1|L1|A|408
7XNX|1|L1|G|409
7XNX|1|L1|A|410
7XNX|1|L1|G|411
7XNX|1|L1|G|412
7XNX|1|L1|G|413
7XNX|1|L1|C|414
7XNX|1|L1|G|415
*
7XNX|1|L3|C|19
7XNX|1|L3|A|20
Current chains
- Chain L1
- 28S rRNA
- Chain L3
- 5.8S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LP
- 60S ribosomal protein L17
- Chain LY
- 60S ribosomal protein L26
- Chain Ll
- 60S ribosomal protein L39
Coloring options: