J3_7XNX_039
3D structure
- PDB id
- 7XNX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/+ Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- (OMG)UC*GCCU(5MC)ACGAUCC*(OMG)GUGUC
- Length
- 21 nucleotides
- Bulged bases
- 7XNX|1|L1|C|4337, 7XNX|1|L1|U|4374
- QA status
- Modified nucleotides: OMG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7XNX_039 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0649
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7XNX|1|L1|OMG|4228
7XNX|1|L1|U|4229
7XNX|1|L1|C|4230
*
7XNX|1|L1|G|4331
7XNX|1|L1|C|4332
7XNX|1|L1|C|4333
7XNX|1|L1|U|4334
7XNX|1|L1|5MC|4335
7XNX|1|L1|A|4336
7XNX|1|L1|C|4337
7XNX|1|L1|G|4338
7XNX|1|L1|A|4339
7XNX|1|L1|U|4340
7XNX|1|L1|C|4341
7XNX|1|L1|C|4342
*
7XNX|1|L1|OMG|4370
7XNX|1|L1|G|4371
7XNX|1|L1|U|4372
7XNX|1|L1|G|4373
7XNX|1|L1|U|4374
7XNX|1|L1|C|4375
Current chains
- Chain L1
- 28S rRNA
Nearby chains
- Chain CC
- Transfer RNA; tRNA
- Chain LQ
- 60S ribosomal protein L18
- Chain LT
- 60S ribosomal protein L21
- Chain La
- 60S ribosomal protein L27
- Chain Lo
- 60S ribosomal protein L36a
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