J3_7XNY_003

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

7XNY|1|L1|C|962, 7XNY|1|L1|C|967, 7XNY|1|L1|C|968, 7XNY|1|L1|C|969, 7XNY|1|L1|U|971, 7XNY|1|L1|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|712
7XNY|1|L1|C|713
*
7XNY|1|L1|G|955
7XNY|1|L1|A|956
7XNY|1|L1|G|957
7XNY|1|L1|G|958
7XNY|1|L1|G|959
7XNY|1|L1|A|960
7XNY|1|L1|G|961
7XNY|1|L1|C|962
7XNY|1|L1|G|963
7XNY|1|L1|A|964
7XNY|1|L1|G|965
7XNY|1|L1|A|966
7XNY|1|L1|C|967
7XNY|1|L1|C|968
7XNY|1|L1|C|969
7XNY|1|L1|G|970
7XNY|1|L1|U|971
7XNY|1|L1|C|972
7XNY|1|L1|G|973
7XNY|1|L1|C|974
7XNY|1|L1|C|975
7XNY|1|L1|G|976
*
7XNY|1|L1|C|1278
7XNY|1|L1|A|1279
7XNY|1|L1|C|1280
7XNY|1|L1|G|1281
7XNY|1|L1|G|1282
7XNY|1|L1|G|1283
7XNY|1|L1|G|1284

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32