J3_7XNY_013

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGGG*CGCUUCUGGCGCCAAG*CGAC

Length

24 nucleotides

Bulged bases

7XNY|1|L1|C|4116, 7XNY|1|L1|U|4117, 7XNY|1|L1|U|4118, 7XNY|1|L1|C|4119, 7XNY|1|L1|U|4120, 7XNY|1|L1|G|4121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7XNY_013 not in the Motif Atlas

Homologous match to J3_8C3A_009

Geometric discrepancy: 0.257

The information below is about J3_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_02167.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

7XNY|1|L1|G|4091
7XNY|1|L1|G|4092
7XNY|1|L1|G|4093
7XNY|1|L1|G|4094
*
7XNY|1|L1|C|4114
7XNY|1|L1|G|4115
7XNY|1|L1|C|4116
7XNY|1|L1|U|4117
7XNY|1|L1|U|4118
7XNY|1|L1|C|4119
7XNY|1|L1|U|4120
7XNY|1|L1|G|4121
7XNY|1|L1|G|4122
7XNY|1|L1|C|4123
7XNY|1|L1|G|4124
7XNY|1|L1|C|4125
7XNY|1|L1|C|4126
7XNY|1|L1|A|4127
7XNY|1|L1|A|4128
7XNY|1|L1|G|4129
*
7XNY|1|L1|C|4155
7XNY|1|L1|G|4156
7XNY|1|L1|A|4157
7XNY|1|L1|C|4158

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LG

60S ribosomal protein L7a

Chain LZ

60S ribosomal protein L27

Chain Lc

60S ribosomal protein L30

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a