J3_7XNY_019
3D structure
- PDB id
- 7XNY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- AG*CGC(A2M)AAUUA*U(A2M)GU
- Length
- 15 nucleotides
- Bulged bases
- 7XNY|1|S2|C|483, 7XNY|1|S2|U|488
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7XNY|1|S2|A|40
7XNY|1|S2|G|41
*
7XNY|1|S2|C|481
7XNY|1|S2|G|482
7XNY|1|S2|C|483
7XNY|1|S2|A2M|484
7XNY|1|S2|A|485
7XNY|1|S2|A|486
7XNY|1|S2|U|487
7XNY|1|S2|U|488
7XNY|1|S2|A|489
*
7XNY|1|S2|U|511
7XNY|1|S2|A2M|512
7XNY|1|S2|G|513
7XNY|1|S2|U|514
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SX
- 40S ribosomal protein S23
- Chain SY
- 40S ribosomal protein S24
Coloring options: