J3_7XNY_036

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGC*GAGCCC*GGACGCUACG

Length

40 nucleotides

Bulged bases

7XNY|1|L1|G|2096, 7XNY|1|L1|U|2097, 7XNY|1|L1|A|2253, 7XNY|1|L1|G|2254, 7XNY|1|L1|C|2255, 7XNY|1|L1|C|2266, 7XNY|1|L1|U|2267, 7XNY|1|L1|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|C|2087
7XNY|1|L1|A|2088
7XNY|1|L1|G|2089
7XNY|1|L1|U|2090
7XNY|1|L1|C|2091
7XNY|1|L1|G|2092
7XNY|1|L1|A|2093
7XNY|1|L1|G|2094
7XNY|1|L1|A|2095
7XNY|1|L1|G|2096
7XNY|1|L1|U|2097
7XNY|1|L1|G|2098
7XNY|1|L1|G|2099
7XNY|1|L1|A|2100
7XNY|1|L1|C|2101
7XNY|1|L1|G|2102
7XNY|1|L1|G|2103
7XNY|1|L1|G|2104
7XNY|1|L1|A|2105
7XNY|1|L1|G|2106
7XNY|1|L1|C|2107
7XNY|1|L1|G|2108
7XNY|1|L1|G|2109
7XNY|1|L1|C|2110
*
7XNY|1|L1|G|2252
7XNY|1|L1|A|2253
7XNY|1|L1|G|2254
7XNY|1|L1|C|2255
7XNY|1|L1|C|2256
7XNY|1|L1|C|2257
*
7XNY|1|L1|G|2261
7XNY|1|L1|G|2262
7XNY|1|L1|A|2263
7XNY|1|L1|C|2264
7XNY|1|L1|G|2265
7XNY|1|L1|C|2266
7XNY|1|L1|U|2267
7XNY|1|L1|A|2268
7XNY|1|L1|C|2269
7XNY|1|L1|G|2270

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain LQ

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29

Chain Lr

60S ribosomal protein L28