J3_7XNY_040

3D structure

PDB id

7XNY (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution cry-EM structure of the human 80S ribosome from SNORD127+/- Kasumi-1 cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

7XNY|1|L1|U|4882, 7XNY|1|L1|A|4938, 7XNY|1|L1|C|4940, 7XNY|1|L1|A|4943, 7XNY|1|L1|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7XNY|1|L1|G|4751
7XNY|1|L1|U|4752
7XNY|1|L1|U|4753
7XNY|1|L1|G|4754
*
7XNY|1|L1|C|4879
7XNY|1|L1|C|4880
7XNY|1|L1|U|4881
7XNY|1|L1|U|4882
7XNY|1|L1|C|4883
*
7XNY|1|L1|G|4936
7XNY|1|L1|C|4937
7XNY|1|L1|A|4938
7XNY|1|L1|C|4939
7XNY|1|L1|C|4940
7XNY|1|L1|G|4941
7XNY|1|L1|C|4942
7XNY|1|L1|A|4943
7XNY|1|L1|C|4944
7XNY|1|L1|G|4945
7XNY|1|L1|U|4946
7XNY|1|L1|U|4947
7XNY|1|L1|C|4948

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a