J3_7Y41_006

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7Y41|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Y41_006 not in the Motif Atlas

Homologous match to J3_5J7L_042

Geometric discrepancy: 0.0945

The information below is about J3_5J7L_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

7Y41|1|A|C|1421
7Y41|1|A|A|1422
7Y41|1|A|A|1423
7Y41|1|A|G|1424
*
7Y41|1|A|C|1823
7Y41|1|A|C|1824
7Y41|1|A|C|1825
7Y41|1|A|A|1826
7Y41|1|A|A|1827
7Y41|1|A|A|1828
7Y41|1|A|C|1829
*
7Y41|1|A|G|1838
7Y41|1|A|U|1839
7Y41|1|A|G|1840

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34