J3_7Y41_008

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Y41_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1215

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7Y41|1|A|U|2314
7Y41|1|A|U|2315
7Y41|1|A|G|2316
*
7Y41|1|A|C|2419
7Y41|1|A|U|2420
7Y41|1|A|A|2421
7Y41|1|A|A|2422
7Y41|1|A|C|2423
*
7Y41|1|A|G|2447
7Y41|1|A|G|2448
7Y41|1|A|A|2449
7Y41|1|A|C|2450
7Y41|1|A|A|2451
7Y41|1|A|G|2452

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain Y

50S ribosomal protein L28