J3_7Y41_010

3D structure

PDB id

7Y41 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycobacterium smegmatis 50S ribosomal subunit from Log Phase of growth

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7Y41|1|A|A|2742, 7Y41|1|A|U|2743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7Y41_010 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.0921

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

7Y41|1|A|C|2741
7Y41|1|A|A|2742
7Y41|1|A|U|2743
7Y41|1|A|C|2744
*
7Y41|1|A|G|2769
7Y41|1|A|U|2770
7Y41|1|A|U|2771
*
7Y41|1|A|A|2785
7Y41|1|A|U|2786
7Y41|1|A|U|2787
7Y41|1|A|A|2788
7Y41|1|A|A|2789
7Y41|1|A|A|2790
7Y41|1|A|G|2791

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L14