3D structure

PDB id
7Y7E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.41 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
7Y7E|1|a|A|504, 7Y7E|1|a|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7Y7E_028 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0985
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

7Y7E|1|a|G|30
7Y7E|1|a|C|31
*
7Y7E|1|a|G|474
7Y7E|1|a|C|475
7Y7E|1|a|G|476
7Y7E|1|a|A|477
7Y7E|1|a|A|478
7Y7E|1|a|A|479
7Y7E|1|a|A|480
7Y7E|1|a|G|481
7Y7E|1|a|A|482
7Y7E|1|a|A|483
7Y7E|1|a|C|484
*
7Y7E|1|a|G|496
7Y7E|1|a|A|497
7Y7E|1|a|G|498
7Y7E|1|a|U|499
7Y7E|1|a|G|500
7Y7E|1|a|A|501
7Y7E|1|a|A|502
7Y7E|1|a|A|503
7Y7E|1|a|A|504
7Y7E|1|a|A|505
7Y7E|1|a|G|506
7Y7E|1|a|A|507
7Y7E|1|a|A|508
7Y7E|1|a|C|509
7Y7E|1|a|C|510

Current chains

Chain a
23S rRNA

Nearby chains

Chain p
50S ribosomal protein L20
Chain r
50S ribosomal protein L22
Chain t
50S ribosomal protein L24

Coloring options:


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