J3_7Z20_018
3D structure
- PDB id
- 7Z20 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.29 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 7Z20|1|b|A|2387, 7Z20|1|b|U|2389, 7Z20|1|b|A|2425
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7Z20_018 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.058
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7Z20|1|b|G|2281
7Z20|1|b|C|2282
7Z20|1|b|A|2283
*
7Z20|1|b|U|2383
7Z20|1|b|C|2384
7Z20|1|b|A|2385
7Z20|1|b|U|2386
7Z20|1|b|A|2387
7Z20|1|b|G|2388
7Z20|1|b|U|2389
7Z20|1|b|G|2390
7Z20|1|b|A|2391
7Z20|1|b|U|2392
7Z20|1|b|C|2393
7Z20|1|b|C|2394
*
7Z20|1|b|G|2420
7Z20|1|b|C|2421
7Z20|1|b|U|2422
7Z20|1|b|C|2423
7Z20|1|b|A|2424
7Z20|1|b|A|2425
7Z20|1|b|C|2426
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L33
- Chain 7
- 50S ribosomal protein L35
- Chain l
- 50S ribosomal protein L15
- Chain y
- 50S ribosomal protein L27
Coloring options: