J3_7ZAG_003

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GG*CGCCAGUGG*CGC

Length

14 nucleotides

Bulged bases

7ZAG|1|2|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|G|639
7ZAG|1|2|G|640
*
7ZAG|1|2|C|684
7ZAG|1|2|G|685
7ZAG|1|2|C|686
7ZAG|1|2|C|687
7ZAG|1|2|A|688
7ZAG|1|2|G|689
7ZAG|1|2|U|690
7ZAG|1|2|G|691
7ZAG|1|2|G|692
*
7ZAG|1|2|C|699
7ZAG|1|2|G|700
7ZAG|1|2|C|701

Current chains

Chain 2

rRNA

Nearby chains

Chain 5

mRNA

Chain A

30S ribosomal protein S3Ae

Chain M

30S ribosomal protein S11

Chain Q

30S ribosomal protein S15