J3_7ZAG_006
3D structure
- PDB id
- 7ZAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- UUUAAUU(OMG)G*CCGGGAACCUCAC*GGCUA
- Length
- 27 nucleotides
- Bulged bases
- 7ZAG|1|2|G|946, 7ZAG|1|2|G|948, 7ZAG|1|2|A|950
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZAG|1|2|U|927
7ZAG|1|2|U|928
7ZAG|1|2|U|929
7ZAG|1|2|A|930
7ZAG|1|2|A|931
7ZAG|1|2|U|932
7ZAG|1|2|U|933
7ZAG|1|2|OMG|934
7ZAG|1|2|G|935
*
7ZAG|1|2|C|944
7ZAG|1|2|C|945
7ZAG|1|2|G|946
7ZAG|1|2|G|947
7ZAG|1|2|G|948
7ZAG|1|2|A|949
7ZAG|1|2|A|950
7ZAG|1|2|C|951
7ZAG|1|2|C|952
7ZAG|1|2|U|953
7ZAG|1|2|C|954
7ZAG|1|2|A|955
7ZAG|1|2|C|956
*
7ZAG|1|2|G|1195
7ZAG|1|2|G|1196
7ZAG|1|2|C|1197
7ZAG|1|2|U|1198
7ZAG|1|2|A|1199
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain 6
- Translation initiation factor 1A
- Chain K
- 30S ribosomal protein S9
- Chain L
- 30S ribosomal protein S10
- Chain O
- 30S ribosomal protein S13
- Chain P
- 30S ribosomal protein S14 type Z
- Chain T
- 30S ribosomal protein S19
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