J3_7ZAG_007

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

GCGAC*GAGAGG*C(4AC)GAAAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|G|962
7ZAG|1|2|C|963
7ZAG|1|2|G|964
7ZAG|1|2|A|965
7ZAG|1|2|C|966
*
7ZAG|1|2|G|1008
7ZAG|1|2|A|1009
7ZAG|1|2|G|1010
7ZAG|1|2|A|1011
7ZAG|1|2|G|1012
7ZAG|1|2|G|1013
*
7ZAG|1|2|C|1183
7ZAG|1|2|4AC|1184
7ZAG|1|2|G|1185
7ZAG|1|2|A|1186
7ZAG|1|2|A|1187
7ZAG|1|2|A|1188
7ZAG|1|2|C|1189

Current chains

Chain 2

rRNA

Nearby chains

Chain P

30S ribosomal protein S14 type Z