J3_7ZAG_008
3D structure
- PDB id
- 7ZAG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.77 Å
Loop
- Sequence
- C(4AC)GUCAG*CGAGAC*GCGACGG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 4AC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7ZAG|1|2|C|1027
7ZAG|1|2|4AC|1028
7ZAG|1|2|G|1029
7ZAG|1|2|U|1030
7ZAG|1|2|C|1031
7ZAG|1|2|A|1032
7ZAG|1|2|G|1033
*
7ZAG|1|2|C|1072
7ZAG|1|2|G|1073
7ZAG|1|2|A|1074
7ZAG|1|2|G|1075
7ZAG|1|2|A|1076
7ZAG|1|2|C|1077
*
7ZAG|1|2|G|1162
7ZAG|1|2|C|1163
7ZAG|1|2|G|1164
7ZAG|1|2|A|1165
7ZAG|1|2|C|1166
7ZAG|1|2|G|1167
7ZAG|1|2|G|1168
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S5
- Chain K
- 30S ribosomal protein S9
- Chain L
- 30S ribosomal protein S10
- Chain P
- 30S ribosomal protein S14 type Z
- Chain S
- 30S ribosomal protein S17e
- Chain Z
- 30S ribosomal protein S3
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