J3_7ZAG_010

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

CAAUG*CUCAGUUC*GCUG

Length

17 nucleotides

Bulged bases

7ZAG|1|2|U|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|C|1211
7ZAG|1|2|A|1212
7ZAG|1|2|A|1213
7ZAG|1|2|U|1214
7ZAG|1|2|G|1215
*
7ZAG|1|2|C|1270
7ZAG|1|2|U|1271
7ZAG|1|2|C|1272
7ZAG|1|2|A|1273
7ZAG|1|2|G|1274
7ZAG|1|2|U|1275
7ZAG|1|2|U|1276
7ZAG|1|2|C|1277
*
7ZAG|1|2|G|1308
7ZAG|1|2|C|1309
7ZAG|1|2|U|1310
7ZAG|1|2|G|1311

Current chains

Chain 2

rRNA

Nearby chains

Chain H

30S ribosomal protein S7

Chain O

30S ribosomal protein S13

Chain U

30S ribosomal protein S19e