J3_7ZAG_011

3D structure

PDB id

7ZAG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA,mRNA, aIF1A and the C-terminal domain of aIF5B.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.77 Å

Loop

Sequence

(4AC)G*CGA(A2M)ACC*GGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7ZAG|1|2|4AC|53
7ZAG|1|2|G|54
*
7ZAG|1|2|C|370
7ZAG|1|2|G|371
7ZAG|1|2|A|372
7ZAG|1|2|A2M|373
7ZAG|1|2|A|374
7ZAG|1|2|C|375
7ZAG|1|2|C|376
*
7ZAG|1|2|G|402
7ZAG|1|2|G|403
7ZAG|1|2|G|404

Current chains

Chain 2

rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain N

30S ribosomal protein S12